Tools for Researchers

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1 University of Miami Scholarly Repository Faculty Research, Publications, and Presentations Department of Health Informatics Tools for Researchers Carmen Bou-Crick MSLS University of Miami Miller School of Medicine, Kimberly Loper MLIS University of Miami, Recommended Citation Bou-Crick, Carmen MSLS and Loper, Kimberly MLIS, "Tools for Researchers" (2013). Faculty Research, Publications, and Presentations This Article is brought to you for free and open access by the Department of Health Informatics at Scholarly Repository. It has been accepted for inclusion in Faculty Research, Publications, and Presentations by an authorized administrator of Scholarly Repository. For more information, please contact

2 Tools for Researchers Information Resources Available at University of Miami Carmen Bou-Crick, M.S.L.S. Head, Reference & Education & Kim Loper, M.L.I.S. Digital Collections & Acquisitions Librarian 2014

3 Class Objectives Upon completion of this lecture, participants will be able to locate and select appropriate tools for their research endeavors, by reviewing the following resources: Resource Guide for Library PubMed and MyNCBI SciVal Experts NIH Public Access Policy RefWorks/Write-N-Cite QUOSA Information Manager Scopus

4 Resource Guide for Researchers at Calder Library PubMed/MyNCBI SciVal Experts NIH Open Access Policy RefWorks/Write-N-Cite QUOSA Information Manager Scopus A collection of relevant databases and links to resources to help researchers in all phases of research

5 Resource Guide for Researchers at Calder Library

6 Navigation/Links to different sections within the page

7 Resources to help you plan your project

8 NIH RePORTER Search for: UMMSM, Dept Neurol or Psych, dementia [Or] alzheimer s

9 Click on any title to see more Project Search Results

10 Project Information

11 You may also Browse NIH by Center or Institute

12 Click on any heading to sort list

13 Enter a topic and RePORTER will search for matching terms and concepts

14 Results for high blood pressure Types of Grants Funding by Institute-- National Heart, Lung, & Blood Institute Study Sections List of projects

15 In About RePORT QUICK LINKS Click here Sign up to receive the Newsletter Click on Categorical Spending

16 Scroll down to see list of research/disease areas

17 Other areas that you should review on your own Awards by Location Funding Facts

18 Awards by Location

19 Funding Facts

20 Any questions about NIH RePORTER? We will now talk about PubMed and MyNCBI topics that you should be familiar with already. How many of you have a MyNCBI account? It is free and easy to get it, if you do not have one yet

21 Researchers Resources at Calder Library PubMed/MyNCBI can be used for planning NIH Open Access Policy SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus PubMed contains citations to articles that report on research results. By keeping up to date with the published literature you will find topics for your own research projects. My NCBI is an personal account that allows you to save records and searches, and create alerts to new publications on your topics of interest.

22 PubMed Access: Researchers Site, Calder Home Page or PubMed.gov

23 Sign into My NCBI (or create new account)

24 Researchers can sign in at the NIH Login w/era Commons info Sign in if already registered New Users: Click Register for an NCBI account

25 Enter your query terms and click Search SIMPLE KEYWORD SEARCH Shows you are signed in New! Post Your comments

26 Link to full text

27 Using filters now 327 results refined from 1033

28 Select articles and send to clipboard

29 Another option is Send to: Collections

30 To share with colleagues make collection public and share link

31 Click on search number and then click on Save in My NCBI TO SAVE A SEARCH

32 Indicate how often you want to receive the updates and how many Click Save when done

33 Saved Search New Feature: SciENCV

34 Enter your data under each category Generates a PDF version of the Biosketch

35 Learn more about PubMed register in one of our Classes PubMed Basics: 04/09/14 (1-2 p.m.) PubMed Advanced: 04/16/14 (4-5 p.m.) PubMed en Español: 04/16/14 (12-1 p.m.) Registration at:

36 When designing a study, first review other clinical trials at ClinicalTrials.gov

37

38 Click on title to see more

39

40

41 Tabular View of the Project

42 Study Results Study Results Tab

43 Search by topic

44 Results on a Map

45 Search Details

46 Any questions about ClinicalTrials.gov? We will move on to review the NIH Public Access Policy

47 Researchers Portal at Calder Library PubMed/MyNCBI NIH Public Access Policy SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus Ensures free access to published results of NIH-funded research Helps advance science by communicating results more quickly and ultimately improving human health

48 Researchers Portal at Calder Library PubMed/MyNCBI NIH Public Access Policy SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus How does the policy affect you? Requires manuscript submission to PubMed Central (PMC) within 12 months of publication (if the journal manuscript is peer-reviewed and arises from any direct funding from an NIH grant active in FY 2008+) PubMed Central is an archive of full-text biomedical journal papers available online without a fee When applying for new grants, include PMC ID numbers or NIH manuscript submission reference numbers for articles accepted for publication; otherwise NIH will delay processing of awards.

49 Method A: Publish in a journal that deposits all final published articles in PubMed Central (PMC) without author involvement. List of Journals

50 Method B: Make arrangements to have the publisher deposit a specific final published article in PubMed Central. Some publishers will deposit an individual final published article in PubMed Central upon author request, and generally for a fee.

51 Method C: Deposit the final peer-reviewed manuscript in PubMed Central yourself via the NIH Manuscript Submission System (NIHMS).

52 Method D: Complete the submission process for a final peer-reviewed manuscript that the publisher has deposited in the NIH Manuscript Submission System (NIHMS).

53 FOR ADDITIONAL INFORMATION PLEASE VISIT SITES LISTED BELOW Calder Library s NIH Public Access Policy Digest Official NIH Public Access Website NIH Glossary and FAQ Identify Submission Method and List of Journals

54 Researchers Resources at Calder Library NIH Open Access Policy PubMed/MyNCBI SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus A database for mentoring and collaboration A resource of UM campus-based experts Researcher profiles updated automatically with publication and grant information (from PubMed and NIH RePORTer) Indexed by research topic Graphical displays for the past 20 years

55 SciVal Experts Search options By department

56 Faculty List

57 The Department s Fingerprint

58 The Department s Fingerprint

59

60

61 Searching by faculty name

62

63 To learn more about SciVal Experts (and Scopus) consider registering for a class Scopus/SciVal Class 4/22/ p.m.

64 Researchers Resources at Calder Library NIH Open Access Policy PubMed/MyNCBI SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus RefWorks is a web-based citation management and bibliography tool. It can help you efficiently store, organize, and share citations and easily format them for papers and bibliographies.

65 Why RefWorks? Accounts can be accessed from any computer that is connected to the Internet No software to install (except Write-N- Cite plugin) Ability to easily share citations with others Always the latest version

66 RefWorks Agenda In today s session you will learn to: Create a RefWorks account and access it from on- and off-campus Import citations into RefWorks using PubMed Import citations into RefWorks using Google Scholar Organize your citations and share them with colleagues at UMiami and beyond Use RefWorks to easily create and format bibliographies Use Write-N-Cite to easily create in-text citations

67 RefWorks - Start Screen Now you are brought to the RefWorks start screen. You are ready to use RefWorks.

68 Exporting Google Scholar Citations If not already in RefWorks log into RefWorks and open a new window for Google Scholar at scholar.google.com Perform your search

69 Select the desired article by clicking on Cite

70 Click on Import to RefWorks

71 Click View Last Imported Folder

72

73 Importing PubMed Citations Search PubMed

74 1. Select from your results the articles you wish to import 2. Select Citation manager from the Send to drop down menu 3. Click Create File

75 Notice the file name Click OK to download your file

76 In the RefWorks window, select Import from the References drop down menus

77 1. Select NLM PubMed from the Import Filter/Data Source drop down menu

78 Select Text File Select the desired file, then click open

79 Click IMPORT

80 You should be notified that Import was completed. Click View Last Imported Folder

81 Citations automatically go into Last Imported and selected folder (in this case - Diabetes folder). If (0) displayed for Diabetes folder, refresh the browser.

82 View Citations 1. To view ALL your citations, select All References from the View menu 2. To view only references within a specific folder, select the desired folder 1.) View All References 2.) Select an individual folder and view references within

83 Bibliographies RefWorks will allow you to create bibliographies formatted in a specific style There are two ways to do this: Write-N-Cite (WNC) add-on for MS Word One line/cite view

84 Write-n-Cite Write-n-Cite Word add-in that allows you to insert citations as you write a paper Formats citations and creates a bibliography using more than 500 styles (e.g., APA, MLA, Chicago)

85 To download Write-N-Cite click on the Tools from the Tool bar and select Write-N-Cite

86 Select the appropriate version of Write-N- Cite for Windows or Mac

87 Write-N-Cite: Inserting Citations RefWorks tab added to MS Word

88 Select desired citation style from the drop down menu

89 2. Click Insert Citation, and then Insert New (already used citations will appear 1. Place the cursor where you would like to input a citation

90 Note: Word is still open Write-n-Cite opens as a pop-up window All your folders are displayed

91 Select the folder where your citation resides; all citations within that folder will populate the citation

92 Select the citation Preview of the citation in the selected style Edit your citation here if necessary and click OK to insert the citation

93 Notice the new citation. Citations can be entered as you type! There is no need to place markers and insert later.

94 When finished writing and ready to add a Bibliography, click Bibliography Options and Insert Bibliography

95 The Bibliography is automatically added to the bottom of the paper

96 If you need to change the style of the Bibliography, click the drop down menu and select your desired style. If the style is not listed, click Select Other Style

97 New in text and Bibliography style automatically updated

98 RefWorks Seminar: 4/23/ p.m.

99 Researchers Resources at Calder Library NIH Open Access Policy PubMed/MyNCBI SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus QUOSA Information Manager is a downloadable tool that helps researchers manage and mine full text articles: Retrieve with one click, one to hundreds of fulltext articles from PubMed, Ovid or Google Scholar, then organize and effectively search the full text

100 Getting QUOSA First you must download QUOSA from the Library homepage: All articles are downloaded to that computer. You can then read and analyze all those articles anywhere you take your computer no internet connection required.

101

102 QUOSA on the desktop

103 1. Results pane (articles downloaded on your computer) 3.Organizer pane 1. Article organizer 2. Document summary 2. Browser pane 1. Search 2. References from a search 3. Results of the search

104 **Select the tool / Channel, you wish to search and it opens in the Browser pane.

105 1. Perform your search as normal 2. Select the number of articles you wish to retrieve (up to 500) and then 3. Click on the Σ retrieve button.

106 Indications that your request is being processed.

107 Results populate the Results Pane and are sortable by clicking on the label (Type, Authors, Title, Source, Published, Engine)

108 Click on the document summary tab in the article organizer pane to display summary of article. Double click on desired article to open in the browser pane.

109 Use summary tab to quickly scan article Click on desired text in summary tab to quickly find in the article

110

111 Concepts4Clustering must be in Advanced View, then click on tab at bottom of the Article Organizer Pane

112 Import into Citation Manager 1.) Select desired citations 2.)Click To Citations

113 If not already in RefWorks, login

114

115

116 Researchers Resources at Calder Library NIH Open Access Policy PubMed/MyNCBI SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus Analyze Journals and Evaluate Authors Largest database in the world for abstracts, citations, and web sources. Includes: Citation tracker h-index Author Identifier Auto-Alerts

117

118

119

120

121

122 Click on document to view Bibliography (which articles were cited)

123

124

125

126

127 Class Overview Resource Guide for Researchers PubMed/MyNCBI NIH Public Access Policy SciVal Experts RefWorks/Write-N-Cite QUOSA Information Manager Scopus For a more in-depth class on any of these products and more wonderful tools, please check our class registration site:

128 Any Questions? The Tools for Researchers PowerPoint is available in the University of Miami Miller School of Medicine s Scholarly Repository: Please take a moment and fill out our class evaluation! This will help us improve the class for future participants.

129 Thank YOU! Please do not hesitate to contact us if you have any questions Carmen Bou-Crick, M.S.L.S. Head, Reference and Education Kim Loper, M.L.I.S. Digital Collections and Acquisitions Librarian

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