Supplementary Figures Supplementary Figure 1 Comparison of among-replicate variance in invasion dynamics

Similar documents
Chapter 27. Inferences for Regression. Remembering Regression. An Example: Body Fat and Waist Size. Remembering Regression (cont.)

More About Regression

Problem Points Score USE YOUR TIME WISELY USE CLOSEST DF AVAILABLE IN TABLE SHOW YOUR WORK TO RECEIVE PARTIAL CREDIT

RANDOMIZED COMPLETE BLOCK DESIGN (RCBD) Probably the most used and useful of the experimental designs.

Mixed models in R using the lme4 package Part 2: Longitudinal data, modeling interactions

Latin Square Design. Design of Experiments - Montgomery Section 4-2

Replicated Latin Square and Crossover Designs

Subject-specific observed profiles of change from baseline vs week trt=10000u

COMP Test on Psychology 320 Check on Mastery of Prerequisites

Statistical Consulting Topics. RCBD with a covariate

AP Statistics Sampling. Sampling Exercise (adapted from a document from the NCSSM Leadership Institute, July 2000).

A NEW LOOK AT FREQUENCY RESOLUTION IN POWER SPECTRAL DENSITY ESTIMATION. Sudeshna Pal, Soosan Beheshti

Bootstrap Methods in Regression Questions Have you had a chance to try any of this? Any of the review questions?

Linear mixed models and when implied assumptions not appropriate

Paired plot designs experience and recommendations for in field product evaluation at Syngenta

Normalization Methods for Two-Color Microarray Data

Frequencies. Chapter 2. Descriptive statistics and charts

Object selectivity of local field potentials and spikes in the macaque inferior temporal cortex

STAT 113: Statistics and Society Ellen Gundlach, Purdue University. (Chapters refer to Moore and Notz, Statistics: Concepts and Controversies, 8e)

STAT 250: Introduction to Biostatistics LAB 6

Estimating. Proportions with Confidence. Chapter 10. Copyright 2006 Brooks/Cole, a division of Thomson Learning, Inc.

Resampling Statistics. Conventional Statistics. Resampling Statistics

GLM Example: One-Way Analysis of Covariance

MATH 214 (NOTES) Math 214 Al Nosedal. Department of Mathematics Indiana University of Pennsylvania. MATH 214 (NOTES) p. 1/3

Algebra I Module 2 Lessons 1 19

User Guide. S-Curve Tool

DV: Liking Cartoon Comedy

I. Model. Q29a. I love the options at my fingertips today, watching videos on my phone, texting, and streaming films. Main Effect X1: Gender

Lab P-6: Synthesis of Sinusoidal Signals A Music Illusion. A k cos.! k t C k / (1)

Relationships Between Quantitative Variables

Relationships. Between Quantitative Variables. Chapter 5. Copyright 2006 Brooks/Cole, a division of Thomson Learning, Inc.

Moving on from MSTAT. March The University of Reading Statistical Services Centre Biometrics Advisory and Support Service to DFID

Multiple-point simulation of multiple categories Part 1. Testing against multiple truncation of a Gaussian field

Olga Feher, PhD Dissertation: Chapter 4 (May 2009) Chapter 4. Cumulative cultural evolution in an isolated colony

DELTA MODULATION AND DPCM CODING OF COLOR SIGNALS

PROC GLM AND PROC MIXED CODES FOR TREND ANALYSES FOR ROW-COLUMN DESIGNED EXPERIMENTS

Changes in fin whale (Balaenoptera physalus) song over a forty-four year period in New England waters

RCBD with Sampling Pooling Experimental and Sampling Error

For the SIA. Applications of Propagation Delay & Skew tool. Introduction. Theory of Operation. Propagation Delay & Skew Tool

Exercises. ASReml Tutorial: B4 Bivariate Analysis p. 55

UNIVERSITY OF CAMBRIDGE INTERNATIONAL EXAMINATIONS General Certificate of Education Ordinary Level

Why visualize data? Advanced GDA and Software: Multivariate approaches, Interactive Graphics, Mondrian, iplots and R. German Bundestagswahl 2005

abc Mark Scheme Statistics 3311 General Certificate of Secondary Education Higher Tier 2007 examination - June series

The Proportion of NUC Pre-56 Titles Represented in OCLC WorldCat

What is Statistics? 13.1 What is Statistics? Statistics

How Large a Sample? CHAPTER 24. Issues in determining sample size

Chapter 3. Averages and Variation

Reliability. What We Will Cover. What Is It? An estimate of the consistency of a test score.

Chapter 6. Normal Distributions

Model II ANOVA: Variance Components

TWO-FACTOR ANOVA Kim Neuendorf 4/9/18 COM 631/731 I. MODEL

GENOTYPE AND ENVIRONMENTAL DIFFERENCES IN FIBRE DIAMETER PROFILE CHARACTERISTICS AND THEIR RELATIONSHIP WITH STAPLE STRENGTH IN MERINO SHEEP

MANOVA/MANCOVA Paul and Kaila

UNIVERSITY OF BAHRAIN COLLEGE OF ENGINEERING DEPARTMENT OF ELECTRICAL AND ELECTRONIC ENGINEERING

Lecture 10: Release the Kraken!

NAA ENHANCING THE QUALITY OF MARKING PROJECT: THE EFFECT OF SAMPLE SIZE ON INCREASED PRECISION IN DETECTING ERRANT MARKING

Sexual Selection I. A broad overview

Do delay tactics affect silking date and yield of maize inbreds? Stephen Zimmerman Creative Component November 2015

Sector sampling. Nick Smith, Kim Iles and Kurt Raynor

N12/5/MATSD/SP2/ENG/TZ0/XX. mathematical STUDIES. Wednesday 7 November 2012 (morning) 1 hour 30 minutes. instructions to candidates

6 ~ata-ink Maximization and Graphical Design

AP Statistics Sec 5.1: An Exercise in Sampling: The Corn Field

Blueline, Linefree, Accuracy Ratio, & Moving Absolute Mean Ratio Charts

Monday 15 May 2017 Afternoon Time allowed: 1 hour 30 minutes

Sexual Selection I. A broad overview

FRAME SCORING BEEF CATTLE: WHY AND HOW. K.C. Olson and J.A. Walker. Department of Animal Science, South Dakota State University

Sociology 7704: Regression Models for Categorical Data Instructor: Natasha Sarkisian

A fitness model for scholarly impact analysis

Restoration of Hyperspectral Push-Broom Scanner Data

MATH& 146 Lesson 11. Section 1.6 Categorical Data

Visual Encoding Design

Introductory Statistics. Lecture 1 Sinan Hanay

MID-TERM EXAMINATION IN DATA MODELS AND DECISION MAKING 22:960:575

hprints , version 1-1 Oct 2008

Optimum Frame Synchronization for Preamble-less Packet Transmission of Turbo Codes

in the Howard County Public School System and Rocketship Education

MANOVA COM 631/731 Spring 2017 M. DANIELS. From Jeffres & Neuendorf (2015) Film and TV Usage National Survey

Chapter 5. Describing Distributions Numerically. Finding the Center: The Median. Spread: Home on the Range. Finding the Center: The Median (cont.

Predictability of Music Descriptor Time Series and its Application to Cover Song Detection

Comparison of Mixed-Effects Model, Pattern-Mixture Model, and Selection Model in Estimating Treatment Effect Using PRO Data in Clinical Trials

StaMPS Persistent Scatterer Exercise

Lesson 7: Measuring Variability for Skewed Distributions (Interquartile Range)

UC San Diego UC San Diego Previously Published Works

Elasticity Imaging with Ultrasound JEE 4980 Final Report. George Michaels and Mary Watts

Technical report on validation of error models for n.

ASReml Tutorial: C1 Variance structures p. 1. ASReml tutorial. C1 Variance structures. Arthur Gilmour

Running head: FEMALE SEXUALIZATION ON SOCIAL MEDIA 1

Improvised Duet Interaction: Learning Improvisation Techniques for Automatic Accompaniment

Darwinian populations and natural selection, by Peter Godfrey-Smith, New York, Oxford University Press, Pp. viii+207.

Barry County 4-H. Name: Address: 4-H Club: 4-H Leader: 4-H Age: Years in 4-H Llama/Alpaca Project:

Precision testing methods of Event Timer A032-ET

Estimation of inter-rater reliability

Distribution of Data and the Empirical Rule

Sampling Worksheet: Rolling Down the River

Common assumptions in color characterization of projectors

WHY DO PEOPLE CARE ABOUT REPUTATION?

Effect of room acoustic conditions on masking efficiency

ESTIMATING THE HEVC DECODING ENERGY USING HIGH-LEVEL VIDEO FEATURES. Christian Herglotz and André Kaup

Mixed Effects Models Yan Wang, Bristol-Myers Squibb, Wallingford, CT

Tutorial 0: Uncertainty in Power and Sample Size Estimation. Acknowledgements:

Transcription:

1 Supplementary Figures Supplementary Figure 1 Comparison of among-replicate variance in invasion dynamics Scaled posterior probability densities for among-replicate variances in invasion speed (nine replicates per treatment). Spatially sorted replicate populations (red solid line) have higher among-replicate variance in invasion speed than shuffled replicate populations (blue dashed line) (model selection results in Supplementary Table 2). Vertical red and blue lines show median estimates for spatially sorted and shuffled replicates, respectively.

2 Supplementary Figure 2 Comparison of CV in invasion extent between treatments Lines show estimated coefficient of variation (CV) in invasion extent for spatially sorted (red solid line) and shuffled (blue dashed line) invasion treatments (nine replicates each). Since mean invasion extent within treatment was low for the first generation relative to the variance in invasion extent (Fig. 2), both treatments had initially high CVs that decreased over time. However, the CV for sorted invasions decreased at a slower rate relative to the CV for shuffled invasions, resulting in an overall higher CV for sorted invasions at the end of the experiment.

3 Supplementary Figure 3 Additive genetic variance in dispersal ability Scaled posterior probability densities for dam variance (solid lines) and sire variance (dashed lines) in dispersal ability (Methods). Vertical lines show median estimates. Females (N = 537) (a) and males (N = 513) (b) were analyzed separately. Models that accounted for sire variance in dispersal ability provided a better fit to dispersal data from a nested paternal half-sib breeding experiment than models which did not account for sire variance (model selection results in Supplementary Table 3), suggesting that dispersal is a heritable trait in C. maculatus.

4 Supplementary Figure 4 Comparison of female post-invasion dispersal kernels Best-fit PIG dispersal kernels for females in spatially sorted (red solid lines, closed circles) and shuffled (blue dashed lines, open circles) populations (nine replicates each), following two generations in a common environment. Panels show best-fit kernels from (a) the first generation (N = 1620) and (b) the second generation (N = 1620) (model selection results in Supplementary Table 4). Lines show best-fit kernels for each population; points show raw data.

5 Supplementary Figure 5 Comparison of male post-invasion dispersal kernels Best-fit PIG dispersal kernels for males in spatially sorted (red solid lines, closed circles) and shuffled (blue dashed lines, open circles) populations (nine replicates each), following two generations in a common environment. Panels show best fit kernels from (a) the first generation (N = 1620) and (b) the second generation (N = 1620) (model selection results in Supplementary Table 5). Lines show best-fit kernels for each population; points show raw data.

6 Supplementary Figure 6 Mean pre-invasion dispersal distance Tukey boxplots showing estimates for mean dispersal distance (ξ) at the start of the experiment (Methods). Distance, in number of patches, is shown for spatially sorted (red solid boxes, closed circles) and shuffled (blue dashed boxes, open circles) populations (nine replicates each). Points show mean estimates, and are jittered along the x-axis to reduce overlap. Females (a) and males (b) were analyzed separately (model selection results in Supplementary Table 6).

7 Supplementary Figure 7 Comparison of post-invasion reproductive rates Tukey boxplots showing the number of offspring per female in spatially sorted (red solid boxes, closed circles) and shuffled (blue dashed boxes, open circles) replicates, following two generations in a common environment (nine replicate populations for each treatment, 11 females per replicate per common garden generation, N = 396; model selection results in Supplementary Table 7). Points show raw data, and are jittered along the x-axis to reduce overlap.

8 Supplementary Figure 8 Comparison of pre- and post-invasion mean dispersal distance Scatterplots of estimated mean dispersal distance for pre-invasion (ξpre) and post-invasion (ξpost) dispersal kernels (Methods). Points show mean dispersal distances for each spatially sorted (red closed circles) and shuffled (blue open circles) replicate (nine each); females (a) and males (b) are plotted separately. The dashed 1:1 line indicates when mean dispersal distances for pre- and post-invasion kernels are equal; points above the 1:1 line reflect an increase in mean dispersal distance from the beginning to the end of the experiment, while points below the 1:1 line reflect a decrease. In general, spatially shuffled replicates occur close to the 1:1 line, indicating little change in mean dispersal distance. Spatially sorted replicates are farther from the 1:1 line than shuffled replicates, suggesting evolutionary changes in dispersal distance that are consistent with our other findings (Fig. 3, Supplementary Figs. 4, 5, Supplementary Tables 4, 5).

9 Supplementary Tables Supplementary Table 1 Invasion extent model selection Model K AIC AIC AIC weight ~ β 0 + β TRT + β GEN + β TRT GEN 7 1074.3 0.00 0.85 ~ β 0 + β TRT + β GEN 6 1078.5 4.17 0.11 ~ β 0 + β GEN 5 1080.1 5.79 0.05 ~ β 0 + β TRT + β GEN 2 6 1128.2 53.85 0.00 ~ β 0 + β GEN 2 5 1130.7 56.37 0.00 ~ β 0 + β TRT + β GEN + β TRT GEN 2 7 1131.7 57.41 0.00 ~ β 0 + β TRT 5 1162.7 88.34 0.00 ~ β 0 4 1165.2 90.88 0.00 The parameters shown in this table are model intercept (β0), effect of treatment (βtrt), effect of generation (βgen), and the effect of the interaction between treatment and generation (βtrt GEN).

10 Supplementary Table 2 Invasion variance model selection σ 2 A TRT σ 2 W TRT WAIC WAIC WAIC weight yes no 929.9 0.00 0.50 yes yes 929.9 0.01 0.50 no no 943.4 13.42 0.00 no yes 945.7 15.72 0.00 The columns σ w 2 TRT and σ A 2 TRT indicate whether the within- or among-replicate variances, respectively, were modeled as having a treatment effect ( yes ) or not ( no ). The fixed-effect structure of these models is represented by the top model in Supplementary Table 1.

11 Supplementary Table 3 Model selection for additive genetic variance in dispersal Sex V A(ξ) WAIC WAIC WAIC weight Females yes 2524.80 0.00 0.80 no 2527.56 2.75 0.20 Males yes 2388.26 0.00 0.65 no 2389.45 1.19 0.36 The column VA(ξ) denotes whether or not the candidate model accounts for additive genetic (sire) variance in ξ, the mean of the PIG distribution (Methods). Model selection results are presented for females and males, which were analyzed separately.

12 Supplementary Table 4 Common garden dispersal model selection (females) Model σ 2 TRT WAIC WAIC WAIC weight ~ β 0 + β TRT + β CGG no 7688.3 0.00 0.15 ~ β 0 + β CGG no 7688.5 0.21 0.14 ~ β 0 + β CGG + β TRT CGG no 7688.8 0.47 0.12 ~ β 0 + β CGG yes 7688.9 0.57 0.12 ~ β 0 + β TRT + β CGG + β TRT CGG no 7689.2 0.93 0.10 ~ β 0 + β TRT no 7689.3 0.97 0.10 ~ β 0 + β TRT + β CGG yes 7689.5 1.24 0.08 ~ β 0 + β CGG + β TRT CGG yes 7689.6 1.26 0.08 ~ β 0 + β TRT + β CGG + β TRT CGG yes 7690.8 2.54 0.04 ~ β 0 + β TRT CGG no 7693.1 4.79 0.01 ~ β 0 no 7693.2 4.89 0.01 ~ β 0 + β TRT + β TRT CGG no 7693.8 5.46 0.01 ~ β 0 + β TRT + β TRT CGG yes 7694.4 6.06 0.01 ~ β 0 yes 7694.4 6.07 0.01 ~ β 0 + β TRT CGG yes 7694.6 6.26 0.01 ~ β 0 + β TRT yes 7694.6 6.33 0.01 The parameters shown in this table are model intercept (β0), effect of treatment (βtrt), effect of common garden generation (βcgg), and the effect of the interaction between treatment and common garden generation (βtrt CGG). We always modeled PIG mean (ξ jkl ) and shape (ω ijk ) parameters as having the same linear predictors (Methods), so for simplicity we only show one representative expression in this table. The column σ 2 TRT indicates whether the random-effect variances on kernel parameters were modeled as having a treatment effect ( yes ) or not ( no ). WAIC support was broadly distributed among eight models, which comprised 90% of the cumulative WAIC weight. Collectively, these models provide support for an effect of treatment on the dispersal kernel. Of these eight models, seven included an effect of shuffle treatment on the kernel s mean (ξ) and shape (ω) and/or random effect variance. All models that contained an effect of treatment showed that female beetles descended from sorted invasion fronts had dispersal kernels with greater means (ξ) but similar shape parameters (ω) when compared to beetles descended from shuffled invasion fronts. Common garden generation had an effect on the mean and shape parameters, independent of treatment. In general, the dispersal kernel mean (ξ) decreased from the first to the second common garden generation, while ω increased. Thus, beetles descended from all invasions dispersed less far in the second common garden generation and had shorter-tailed dispersal kernels than in the first generation. Three of the eight top models include an interactive effect between the shuffle treatment and common garden generation. Under these models, females from the shuffle treatment experienced smaller parameter changes between the first and second common garden generations than their sorted counterparts (Supplementary Figure 4).

13 Supplementary Table 5 Common garden dispersal model selection (males) Model σ 2 TRT WAIC WAIC WAIC weight ~ β 0 + β CGG yes 8148.0 0.00 0.43 ~ β 0 + β TRT + β CGG yes 8149.2 1.24 0.23 ~ β 0 + β CGG + β TRT CGG yes 8149.5 1.56 0.20 ~ β 0 + β TRT + β CGG + β TRT CGG yes 8150.6 2.62 0.12 ~ β 0 + β CGG no 8154.6 6.66 0.02 ~ β 0 + β TRT + β CGG no 8155.9 7.92 0.01 ~ β 0 + β CGG + β TRT CGG no 8157.0 9.05 0.00 ~ β 0 + β TRT + β CGG + β TRT CGG no 8157.9 9.90 0.00 ~ β 0 + β TRT CGG yes 8162.5 14.49 0.00 ~ β 0 + β TRT + β TRT CGG yes 8163.3 15.39 0.00 ~ β 0 + β TRT yes 8163.8 15.82 0.00 ~ β 0 yes 8164.1 16.11 0.00 ~ β 0 + β TRT CGG no 8169.2 21.27 0.00 ~ β 0 no 8169.6 21.68 0.00 ~ β 0 + β TRT no 8169.8 21.89 0.00 ~ β 0 + β TRT + β TRT CGG no 8169.9 21.97 0.00 The parameters shown in this table are model intercept (β0), effect of treatment (βtrt), effect of common garden generation (βcgg), and the effect of the interaction between treatment and common garden generation (βtrt CGG). We always modeled PIG mean (ξ jkl ) and shape (ω ijk ) parameters as having the same linear predictors (Methods), so for simplicity we only show one representative expression in this table. The column σ 2 TRT indicates whether the random-effect variances on kernel parameters were modeled as having a treatment effect ( yes ) or not ( no ). There were four top models comprising 97% of the cumulative WAIC weight. The single best model (43% WAIC weight) includes the fixed effect of common garden generation and treatment-specific variances in random effects. All four top models include treatment-specific variances in random effects, with greater among-population variance for sorted invasions; three of these models also include a fixed effect of treatment on kernel parameters. These parameter estimates suggest that males descended from spatially sorted invasions had a farther mean dispersal distance than males descended from shuffled invasions (Supplementary Figure 5). Parameter estimates show that males experienced a decrease in ξ from the first to second common garden generation, similar to what was observed in females (Supplementary Table 4). Shape parameters (ω) increased from the first to the second common garden generation reducing kernel variance over time again similar to the response observed in females (Supplementary Table 4).

14 Supplementary Table 6 Pre-invasion dispersal kernel model selection Sex Model σ 2 TRT WAIC WAIC WAIC weight Females ~ β 0 no 1150.92 0.00 0.47 ~ β 0 yes 1151.86 0.95 0.29 ~ β 0 + β TRT yes 1153.63 2.71 0.12 ~ β 0 + β TRT no 1153.78 2.87 0.11 Males ~ β 0 yes 1279.34 0.00 0.38 ~ β 0 no 1279.53 0.20 0.35 ~ β 0 + β TRT no 1281.28 1.95 0.14 ~ β 0 + β TRT yes 1281.49 2.15 0.13 The parameters shown in this table are model intercept (β0), and effect of treatment (βtrt). We always modeled PIG mean (ξ jkl ) and shape (ω ijk ) parameters as having the same model structure (Methods), so for simplicity we only show one representative expression in this table. The column σ 2 TRT indicates whether the random-effect variances on kernel parameters were modeled as having a treatment effect ( yes ) or not ( no ). Model selection results are presented for females and males, which were analyzed independently. WAIC weights may not sum to 1 due to rounding.

15 Supplementary Table 7 Common garden fecundity model selection Model K AIC AIC AIC weight ~ β 0 4 3402.7 0.00 0.52 ~ β 0 + β TRT 5 3404.7 2.00 0.19 ~ β 0 + β CGG 5 3404.7 2.00 0.19 ~ β 0 + β TRT + β CGG 6 3406.7 4.00 0.07 ~ β 0 + β TRT + β CGG + β TRT CGG 7 3408.6 5.90 0.03 The parameters shown in this table are model intercept (β0), effect of treatment (βtrt), effect of common garden generation (βcgg), and the effect of the interaction between treatment and common garden generation (βtrt CGG). Fecundity was modeled as being negative-binomially distributed (Methods).

16 Supplementary Table 8 Bottleneck size model selection Model K AIC AIC AIC weight ~ β 0 1 500.09 0.00 0.52 ~ β 0 + β TRT 2 502.00 1.91 0.20 ~ β 0 + β CGG 2 502.13 2.05 0.19 ~ β 0 + β TRT + β CGG 3 504.07 3.98 0.07 ~ β 0 + β TRT + β CGG + β TRT CGG 4 506.09 6.00 0.03 The parameters shown in this table are model intercept (β0), effect of treatment (βtrt), effect of common garden generation (βcgg), and the effect of the interaction between treatment and common garden generation (βtrt CGG). Bottleneck size was modeled as being Poisson distributed (Methods). The best-fitting model was the null model (52% AIC weight), suggesting that neither treatment nor generation had an effect on the size of the population bottleneck.