Data Citation Principles Workshop May 16 17, 2011 IQSS at Harvard University

Transcription

1 Data Citation Principles Workshop May 16 17, 2011 IQSS at Harvard University Deep Data Citation Mechanism and Service for Scientific Data: Defining Framework for Biodiversity Data Publishers Vishwas Chavan Global l Biodiversity Information Facility (GBIF) Secretariat May 16, 2011

2 Outlines 1. About GBIF 2. GBIF Data Publishing Framework 3. Data Citation 4. Data Citation formulations 5. Waterfall Model of Data Citation

3 About GBIF

4 GBIF: Vision and Mission Vision: A world in which biodiversity information is freely and universally available for science, society, and a sustainable future Mission: To be the foremost global resource for biodiversity information, and engender smart solutions for environmental and human well-being

5 GBIF Country Participants 2011 Voting Participants: 33 Associate Participants: 23 Associate Participating Organisations: 46 Last updated:

6 Growth in Data Records Milli ion of prima ary biodivers sity records Last updated:

7 Data Publishing Framework

8 Why should I publish data? Recognition Opportunities Investment

9 Data Publishing Framework Cultural change towards free and open access to biodiversity it dt data Addresses social, technical, and policy concerns Answer What is there for me? for ALL The Data Publishing Framework is defined as environment conducive to enabling free and open access to the world s primary biodiversity data. The core purpose p of the framework is to overcome socio political, technicalinfrastructural, policy political, legal and economic investmentbarriers orimpedimentsaffecting the discovery and publishing of data

10 Infrastructure and Technical Legal Policy and Political Economic Socio Cultural l Chavan and Ingwersen (2009), BMC Bioinformatics, 10 (Suppl. 14): S2

11 DPF: Core Technical Components Data Citation Mechanisms Persistent Identifiers Data Usage Index Chavan and Ingwersen (2009), BMC Bioinformatics, 10 (Suppl. 14): S2

12 Data Citation

13 Data Citations today: Example Source: GBIF Data Portal, data.gbif.net Search string: Panthera tigris Search results: 696 records, from 37 datasets, published by 31 Data Publishers Date: Thursday, 4 November 2010, Time: Existing Data Citation style Please cite this data as follows: (accessed through GBIF data portal, Mammal specimens, (accessed through GBIF data portal, Vertebrate specimens, (accessed through GBIF data portal, Natural History Museum Rotterdam, (accessed through GBIF data portal, Database Schema for UC Davis Wildlife museum, (accessed through GBIF data portal, UNSM Vertebrate Specimens, Un-answered facts What was the search string? How many records were retrieved? How many Data Publishers contributed to the data? When search was carried out? Who is the original contributor of the data? Who played what role from collection to publishing? How can I retrieve the same result?

14 Data Citation: What is needed? Deep data citation mechanism Recognise ALL with their roles Multilayer citation producer, publisher, aggregator, curator Cascading Citations citations within citations Data Citation Service Resolve citation any time Discover the underlined data

15 Data Citation: Challenges Dealing with dynamic streaming data? Resolving to human or machine interpretable description of object? Need for registry of name spaces? Can metadata standards support multiple GUIDs? Failure to enforce data citation as mandatory step in Publishing cycle

16 Waterfall model of data citation

17 Data Citation formulations Types of Publishers Publisher (individual) Publisher (group of individuals) Institution or Research Group or Consortium Release / Update frequency One time release Frequent updates

18 Data Citation formulations... Publisher (individual) one time data release Publisher (YEAR), <Title of the data resource>, <total t nos. of records>, published <modes of publishing>, <Primary access point>, released on<release date>, <Persistent Identifier>. Rumble KJ (1998) Cephalopods of North America Rumble KJ (1998). Cephalopods of North America records, published online, released on 31/12/1998, doi: /iisc

19 Data Citation formulations... Publisher (group of individuals) frequent updates Publisher 1,... and Publisher n <YEAR). <Title of the data resource>, <total nos. of records>, published <modes of publishing>, <Primary access point>, first released on<release date>, <current version no. or last updated/released d/ d on (date)>, <Persistent t Identifier>. Remsen D, Bello J, Sheldon S, Raymond M, and AJK Arino (2005 -). Fishes of the Cape Cod Region, MA,USA records published online, first released on 17/05/2005, last updated on 10/10/2010, doi: /mbl

20 Data Citation formulations... Institute/Research Group/ Consortium frequent updates <Publisher as Institution / Research Group / Consortium> <YEAR (Year first published / released -)>, <Title of the data resource>, <total nos. of records>, <Contributed by contributor 1(role), contributor 2 (role)... contributor n(role)>, <published (modes of publishing)>, <Primary access point>,<version no., or last updated/released on (date)>, <Persistent Identifier>. Smithsonian National Museum of Natural History (2002 -), Museum Collection Records: Mammals records. Contributed by Helgen KM (Principal Investigator, cutrator, author), Gordon LK (manager, author, curator), Peurach SC (author, manager), Potter CW (manager, author), Carleton MD (curator), Maldonado JE (author, developer), Wilson DE (curator, author), Thorington Jr RW (curator, author, validator), Ludwig CA (manager, developer, author), Lunde DP (author). Published online, first released on 12/02/2002, last updated on 15/09/2010, doi: /smi

21 Waterfall model for Data Citation Cascading citations Citations within citations Recognising roles in data management life cycle Three types of citations Publisher determined citations User driven citations Composite citations Use of Persistent Identifiers (PI) Persistent Identifiers for each citation types Support multiple types of PIs Handles, ARK, PURL, URN, LSID, DoI etc. Data Citation service Registration service: assign PI to citations Resolver service: resolve citations from PIs

22 Waterfall model for Data Citation: exemplification Source: GBIF Data Portal, data.gbif.net Search string: Panthera tigris Search results: 696 records, from 37 datasets, published by 31 Data Publishers Date: Thursday, 4 November 2010, Time: User Search (2010). user doi: /gbif t t (2010). Search string:panthera ti th tigris, i 696 records, contributed by 37 data resources, user doi: /gbif , accessed on 04/11/2010, 10:03:30. (data resources: doi: /lsu , unr:lsid:msu.org:observation:541, loc unsm urn:gnhm: ,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...,...). User driven citation using Persistent Identifier resolve to full composite citation and/or snapshot of resultant data can be accessed Medium sized composite citation resolve to full composite citation including detailed Publisher determined d citation in cascading manner

23 Waterfall model for Data Citation: exemplification Full length composite citation (2010). Search string:panthera tigris, 696 records, contributed by 37 data resources, user doi: /gbif , accessed on 04/11/2010, 10:03:30. User driven citation 1. Louisian State University (2007), Museum of Natural Science: Collection of Mammal, records. Contributed by Patterson DN (Principal Institutional Investigator, dataset, architect, onetime author), release, doi Sandeep PK (author, curator), Fieldman LN (author, developer), Remsen D (curator, validator), published online released on October 2007, doi: /lsu Michigan State University (2001 -), MSU Vertebrate Collection, records. Contributed by Cook DK (Principal Investigator, author, curator, Institutional validator), dataset, Hirsh L frequent (author, architect, update, lsid developer), Lane MP (manager, author, curator)..., Morris JH (curator), published online first released on 01/10/2001, last updated on 18/01/2010, urn:lsid:msu.org:observation: Cursada PK, Bello J, and AJK Moelicker (2006), Natural History Museum Rotterdam: Mammal collection, 1123 records, published online, released on 7 July 2006, Multiple authors, frequent update, ARK Single author, frequent update, handel 37. Rumble KJ (1998 -). Vertebarte collection of Rumble records, published online, first released on 13/09/1998, last updated on 27/01/2010,

24 Waterfall model for Data Citation: How will this happen? Publisher determined citations Detailed citation as part of metadata document, and/or Register citation at Citation Service Persistent Identifier is assigned to metadata document and/or citations i alone User driven citations ti Search data through Publisher access point Single dataset Search result together with Publisher determined citation Multiple datasets Search result together with all datasets User write user driven string of citation User register it citation ti with Citation ti Service User archive snapshot of search linked to user driven citation

25 Process for Publisher determined citations Database Administrator Database Administrator Database Administrator Database Administrator Database Administrator Citation Service(s) Persistent Identifier Metadata Catalogue(s) Discovery Platforms Aggregators Networks Information Systems

26 Process for User driven citations Archive dataset used User access data Citation Service returns PI Finalise dataset for use Use Citation Service

27 Wish List for Data Citation Best practice guide for data citation Persistent identifiers to datasets Credit to all players from data producers to publishers, aggregators etc. All levels of granularity and combinations With or without annotations Link between traditional literature and data Coordinated citation support for ALL Research metrics for datasets

28 Impact of Data Citation Data Use Data Citation Data Preservation Data Discovery Data Publishing

29 Data Publishing = Scholarly Publishing! vchavan@gbif.org